Sunday 20 January 2013

ORGANIC COMPOUNDS and FUNCTIONAL GROUP

ORGANIC COMPOUNDS and FUNCTIONAL GROUP 

- Always contain Carbon

- Usually contain Hydrogen

-Always have covalent bonds.

- Many are made up of long chain of Carbon atoms

-Make up 38- 43 % of the human body.

- Have unique characteristics that allow them to carry out complex functions.

 IMPORTANT CATEGORIES

1. CARBOHYDRATES

2. LIPIDS

3. PROTEINS

4. NUCLEIC ACIDS

5. ATP

CARBON AND FUNCTIONAL GROUPS

Carbon can form bond with 1 to 1000 carbon atoms to produce large molecules that can have different shapes

CARBON SKELETON

The chain of carbon atoms in an organic molecule.

HYDROCARBONS

Carbons bonded to Hydrogen atoms.


FUNCTIONAL GROUP


An atom or group of atoms

 -  that replaces hydrogen in an organic compound 
 -  that defines the structure of a family of compounds 
 -  determines the properties of the family.



Each type of functional group has a specific arrangement of atoms that confers characteristic chemical properties on the organic molecules attached to it.  

MAJOR FUNCTIONAL GROUPS

R = VARIABLE GROUP.

1. Hydroxyl              R - O - H

2. Sulfhydryl             R - S -H

3. Carbonyl               R - C=O.

4. Carboxyl               R - COOH 

5. Ester                     R - COO

6. Phosphate             R  - PO4 2– 

7. Amino                   R - NH2



1. Hydroxyl  -OH

R - O -H

- Alcohols

- Contain an -OH group

-Is polar 
           and   
     hydrophilic due to its electronegative Oxygen atom.

- Molecules with many -OH groups

-  dissolve easily in water

eg. Ethanol - C2H5OH



2. Sulfhydryl            -SH


R - S - H


THIOLS or MERCAPTANS


-Have an -SH group 

-Is polar and hydrophilic 

         - due to its electronegative Sulphur atom.


eg.Methyl mercaptan     CH3-SH


Certain amino acids contain -SH groups 
 -which stabilize the shape of proteins

eg . Cysteine


3. Carbonyl     R - C=O. 




Aldehyde
ALDEHYDES   R- CHO



A. KETONES      R -  CO - R


-Contains a carbonyl group with in the carbon skeleton.

The carbonyl group is polar and hydrophilic 

                    - due to its electronegative Oxygen atom.

eg. Acetone.


B. ALDEHYDE         -CHO

-Have a carbonyl group at the end of the carbon skeleton.

eg. acetaldehyde


4. Carboxyl           - COOH

Carboxylic acid

CARBOXYLIC ACID   -COOH

Carboxylic acids contain a carboxyl group at the end of the carbon skeleton.

All amino acids have a -COOH group at 1 end.

The negatively charged form predominates at the pH of body cells

- is hydrophilic.

eg.    Acetic acid      CH3COOH


5. ESTER    -COO

Ester



-Predominate in dietary fats and oils

- Occur in our body in trigycerides

eg. Aspirin

      -is an ester of Salicylic acid

      - a pain relieving molecule

      - found in the bark of the willow tree.

6. PHOSPHATE     -PO4 2-





- Contain a phosphate group

- Is very hydrophilic  due to dual negative charges

eg. ATP

7. Amino          -NH2


        

-Amines have an   -NH2 group.

- Can act as a base.

- Pick up a Hydrogen ion 
       - giving the amino group a positive charge .

At the pH of body fluids, 
   most amino groups have a charge of 1+.

All amino acids have an amino group at 1 end.



MACROMOLECULES

macro= large

- Small organic molecules can combine into very large molecules.

- Are usually polymers

eg. Carbohydrates

A. MONOMERS
B. POLYMERS

MONOMERS

   mono= 1
- mers = parts

- small building block molecules.


POLYMERS

poly= many

A polymer is a large molecule formed by the covalent bonding of many identical or similar monomers.

The reaction that joins 2 monomers is normally a dehydration synthesis.

DEHYDRATION SYNTHESIS REACTION

In this type of reaction,
   - a hydrogen atom is removed from 1 monomer 
   - a hydroxylgroup is removed from other
                   -  to form a molecule of water.


ISOMERS

iso= equal

Molecules that have same molecular formula 
   but different structure

eg.

Molecular formula for glucose and fructose are both C6H12O6

But structural formula differs giving different chemical properties 
    - because relative positions of oxygen and carbon atoms are different.






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